Analysing individual 3D tree structure using the R package ITSMe

Meta-Analysis in R Using Package rmeta

Meta-Analysis means a statistical analysis on the results of their findings is to combine a large number of independent studies. Meta-Analysis software is needed to be done for convenience, Statistical Software for Meta-Analysis is available in many statistical packages available in the present study provide software R is for Meta-Analysis. First, a brief description of the Meta-Analysis, Stati...

Using the cherry R package

opm: an R package for analysing OmniLog® phenotype microarray data

SUMMARY opm is an R package designed to analyse multidimensional OmniLog® phenotype microarray (PM) data. opm provides management, visualization and statistical analysis of PM data, including curve-parameter estimation and discretization, dedicated and customizable plots, metadata management, automated generation of textual and tabular reports, mapping of substrates to databases, batch conversi...

BayesPeak—an R package for analysing ChIP-seq data

MOTIVATION Identification of genomic regions of interest in ChIP-seq data, commonly referred to as peak-calling, aims to find the locations of transcription factor binding sites, modified histones or nucleosomes. The BayesPeak algorithm was developed to model the data structure using Bayesian statistical techniques and was shown to be a reliable method, but did not have a full-genome implementa...

ASpli: An integrative R package for analysing alternative splicing using RNAseq

3 Running ASpli 2 3.1 To BIN or not to BIN . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2 3.2 Read Counting . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 3.2.1 Mapping file and bam loading . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4 3.2.2 Overlap features and read ali...